Top Reasons for GST Notices – Are You at Risk?

top reasons for gst notices are you at risk

The Goods and Services Tax (GST) has combined several indirect taxes into a single tax structure, revolutionizing taxation in many nations, including India. GST streamlines taxes, but compliance is vital and complicated. GST notifications from tax authorities may be intimidating for businesses and individuals. Understanding the reasons for these alerts helps improve compliance and prevent problems from escalating.

Introduction to GST notices

Tax authorities send GST notifications to notify or require taxpayer action on inconsistencies, defaults, or compliance difficulties. These notifications might be basic inquiries or more significant tax evasion or fraud claims. Businesses must understand GST notification kinds and reasons to manage the GST system.

Common GST notice causes

1. Mismatched GSTR-3B and 2A

A GST notification is often sent when a taxpayer’s GSTR-3B return (summary return) does not match their GSTR-2A return (auto-populated from supplier reports). Differences between these two returns may suggest input tax credit under- or over-reporting, triggering notifications.


A company may claim ITC on invoices received, but if the supplier misreports them, the discrepancy occurs. Prevent such notifications by reconciling GSTR-3B and GSTR-2A regularly.

2. Late or non-filing returns

GST mandates timely submission of GSTR-1, GSTR-3B, and yearly returns. Not submitting or late filing these returns results in notifications and fines. Consistent late filing may also revoke GST registration.


A taxpayer who repeatedly misses the GSTR-3B deadline may get a notification requesting the late taxes plus fines and interest.

3. Annual return and reconciliation statement discrepancies

Businesses need annual returns (GSTR-9) and reconciliation statements (GSTR-9C) to summarize their yearly activity. The periodic returns (GSTR-1 and GSTR-3B) submitted during the year may differ from these returns, resulting in notifications.


A business’s yearly return may show different sales than its monthly or quarterly results. The tax authorities need explanations for such anomalies.

4. Over Claiming input tax credits

An excessive ITC claim raises concerns for tax officials. ITC claims that look excessive to the business’s turnover or industry norms are typically followed with notices.


If a small retail shop claims ITC that exceeds actual sales, the authorities may request verification and explanation.

5. GST turnover not matching income tax returns

Tax authorities compare GST and income tax turnover. Significant differences may indicate underreporting of income or sales.


A taxpayer may report larger sales in income tax returns to get advantages but lower sales in GST filings to avoid tax burden, resulting in a mismatch and notification.

6. Electronic credit ledger credit use

Notices may result from improper use of electronic credit ledger credits, such as GST-prohibited credits.


A firm may be audited for using capital goods credits to pay GST on external deliveries.

7. E-Way bill compliance issues

The e-way bill system tracks items to prevent tax evasion. Notices might come from non-generation, erroneous facts, or e-way bill-to-goods mismatches.


If items are carried without a valid e-way bill or with erroneous data, the firm may be warned.

8. TDS/TCS return discrepancies

TDS and TCS under GST ensure compliance for specific transactions. TDS/TCS return discrepancies or non-filing might result in notifications.


TDS-deducting businesses who fail to submit returns or declare erroneous amounts may get notification from the authorities.

9. Tax non-payment or short payment notices

Nonpayment or underpayment of taxes is significant. Authorities send reminders to collect taxes, interest, and penalties.


A firm that underreports its GSTR-3B tax due relative to sales data will get a notice to make up the difference.

Types of GST notices

GST notifications in different formats serve different purposes. Knowing the sorts of notifications helps handle them.

1. Non-Filing Notice (GSTR-3A)

This notification requires taxpayers to submit returns and pay late fines when they miss the deadline.

a. Section 61

Mismatches between GSTR-3B and GSTR-2A or GSTR-1 during return inspection result in this notification.

b. Section 70

Tax authorities send summons to taxpayers to furnish information or documents for investigations.

c. Sections 73–74

The notifications need an explanation for tax non-payment or short payment. Section 73 covers non-fraudulent situations, whereas Section 74 covers fraud or deliberate falsification.

d. Section 75

After a show cause notice, this notification seeks tax, interest, and penalties.

e. Section 60

This notification lets the taxpayer pay taxes until final assessment if they need provisional assessment owing to tax obligation calculation issues.

Registration cancellation notice (Section 29)

This notification seeks explanations why the taxpayer’s registration should not be terminated when they fail to comply.

Responding to GST notices

Receiving a GST notice is stressful, but responding quickly and correctly is essential. Here are some steps:

a. Understand notice

Read the notification carefully to understand its purpose, kind, and action. Find the GST legislation provisions that issue the notice.

b. Get relevant info

Gather notice-related papers and information. It may contain invoices, refunds, ledgers, and other documents.

c. Seek professional advice

Consult a tax specialist or consultant if the notice includes complicated concerns or substantial sums.

d. Quickly respond

Timely reaction is crucial. Address notice points and offer explanations or documentation.

e. Fix errors

Correct mistakes and inconsistencies in future returns and retain records if the notification is required.

f. Prep for hearing

Prepare for a hearing by gathering all essential papers and explaining your stance.

g. Following up

Keep track of the notification and contact authorities if necessary. Record all reactions and activities.

GST compliance best practices

Having tally training in Ahmedabad can help you know the GST compliance best practices. Businesses should follow GST compliance best practices to avoid GST notices:

1. Regular reconciliation

To catch anomalies early, reconcile GSTR-3B with GSTR-2A, GSTR-1, and accounting records regularly.

2. Timely filing

File GST returns on time to avoid late penalties, interest, and notifications.

3. Correct recording

Keep meticulous records of transactions, invoices, and refunds. This clarifies questions and contradictions.

4. Awareness and training

To prevent mistakes, teach GST compliance professionals on the latest changes, laws, and best practices.

5. Using technology

Use GST software for correct tax submission, reconciliation, and record-keeping.

6. Professional advice

For complicated concerns or compliance questions, consult tax specialists.


GST notifications help tax administrators resolve issues and ensure compliance. Businesses may reduce these alerts and manage them better by understanding their causes and following best practices. Professional counsel and timely, correct compliance are essential for GST success.